m_hdf.cc

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/* Copyright (C) 2000, 2001 Stefan Buehler <sbuehler@uni-bremen.de>
                            Patrick Eriksson <patrick@rss.chalmers.se>
                            
   This program is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by the
   Free Software Foundation; either version 2, or (at your option) any
   later version.
 
   This program is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.
 
   You should have received a copy of the GNU General Public License
   along with this program; if not, write to the Free Software
   Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307,
   USA. */
 
 
 
//   File description
 
#if HAVE_CONFIG_H
#include "config.h"
#endif  
 
//   External declarations
 
#include <math.h>
#include "arts.h"
#include "atm_funcs.h"          
#include "math_funcs.h"
#include "messages.h"
#include "auto_md.h"
#include "make_array.h"
 
#ifdef HDF_SUPPORT
 
#include <hdf.h>
 
 
 
//   Some help functions
 
 
void filename_bin(
              String&  filename,
        const String&  varname )
{
  if ( "" == filename )
  {
    extern const String out_basename;                       
    filename = out_basename+"."+varname+".ab";
  }
}
 
 
 
 
void check_data_types()
{
  if ( sizeof(Index) != 4 )
    throw runtime_error("An Index is expected to be 4 bytes.");
  if ( sizeof(float) != 4 )
    throw runtime_error("A float is expected to be 4 bytes.");
  if ( sizeof(double) != 8 )
    throw runtime_error("A double is expected to be 8 bytes.");
  if ( sizeof(char) != 1 )
    throw runtime_error("A char is expected to be 1 byte.");
}
 
 
 
 
void binfile_open_out(
              int&      fid,
        const String&   filename )
{
  // Open the file for writing (deleting an old file with same name)
  fid = Hopen( filename.c_str(), DFACC_CREATE, 0 );
  if ( fid < 0 )
  {
    ostringstream os;
    os << "Cannot create output file: " << filename << '\n'
       << "Maybe you don't have write access to the directory or the file?";
    throw runtime_error(os.str());
  }
  out2 << "  Opened file " << filename << " for writing.\n";
 
  // Initialize the VS interface
  if ( Vstart( fid ) < 0 )
  {
    ostringstream os;
    os << "Cannot initialize the VS interafce in file: " << filename;
    throw runtime_error(os.str());
  }
}
 
 
 
 
void binfile_open_in(
              int&      fid,
        const String&   filename )
{
  // Check if the file is HDF
  if ( Hishdf( filename.c_str() ) < 0 )
  {
    ostringstream os;
    os << "The file " << filename << " is not a HDF file.\n";
    throw runtime_error(os.str());
  }
 
  // Open the file for reading
  fid = Hopen( filename.c_str(), DFACC_READ, 0 );
  if ( fid < 0 )
  {
    ostringstream os;
    os << "Cannot open input file: " << filename << '\n'
       << "Maybe you don't have read access to the directory or the file?";
    throw runtime_error(os.str());
  }
  out2 << "  Opened file " << filename << " for reading.\n";
 
  // Initialize the VS interface
  if ( Vstart( fid ) < 0 )
  {
    ostringstream os;
    os << "Cannot initialize the VS interafce in file: " << filename;
    throw runtime_error(os.str());
  }
}
 
 
 
 
void binfile_close(
              int&      fid,
        const String&   filename )
{
  // Terminate access to the VS interface
  if ( Vend( fid ) < 0 )
  {
    ostringstream os;
    os << "Cannot terminate access to the VS interface in: " << filename;
    throw runtime_error(os.str());
  }
 
  // Close the file
  if ( Hclose( fid ) < 0 )
  {
    ostringstream os;
    os << "Cannot close file: " << filename;
    throw runtime_error(os.str());
  }
 
  out2 << "  Closed file " << filename << "\n";
}
 
 
 
 
void binfile_write_size( 
        const String&   filename, 
        const String&   dataname,
        const int&      vdata_id,
        const Index&   nrows,
        const Index&   ncols )
{
  Index v[2];
  v[0] = nrows;
  v[1] = ncols;
 
  if ( VSsetattr( vdata_id, _HDF_VDATA, "SIZE", DFNT_UINT32, 2, v ) < 0 )
  {
    ostringstream os;
    os << "Cannot write size data for " << dataname << " in file " << filename;
    throw runtime_error(os.str());
  }
}
 
 
 
 
void binfile_read_init(
              int&      vdata_id,
              Index&   nrows,
              Index&   ncols,
        const int&      fid,
        const String&   filename,
        const String&   dataname,
        const String&   storagetype,
        const Index&   nrows0,
        const Index&   ncols0 )
{
  // Find the Vdata in the file
  int  vdata_ref = VSfind( fid, dataname.c_str() );
  if ( vdata_ref <= 0 )
  {
    ostringstream os;
    os << "Cannot find the data " << dataname << " in file " <<filename<<"\n"
       << "Maybe the file contains data of other type";
    throw runtime_error(os.str());
  }
 
  // Attach the Vdata
  vdata_id = VSattach( fid, vdata_ref, "r" );
  if ( vdata_id <= 0 )
  {
    ostringstream os;
    os << "Cannot attach the data " << dataname << " in file " << filename;
    throw runtime_error(os.str());
  }
 
  // Get number of rows and columns
  Index  v[2];
  if ( VSgetattr( vdata_id, _HDF_VDATA, 0, v ) < 0 )
  {
    ostringstream os;
    os << "Cannot determine the size of " << dataname << "\n" 
       << "in file " << filename;
    throw runtime_error(os.str());
  }
  nrows = v[0];
  ncols = v[1];
 
  // Check if number of rows and columns are as expected
  if ( (nrows0>0) && (nrows!=nrows0) )
  {
    ostringstream os;
    os << nrows0 << " rows were expected, but the data have " <<nrows<<" rows";
    throw runtime_error(os.str());    
  }
  if ( (ncols0>0) && (ncols!=ncols0) )
  {
    ostringstream os;
    os << ncols0 << " columns were expected, but the data have " << ncols
       << " columns";
    throw runtime_error(os.str());    
  }
 
  // Set fields to read
  if ( (nrows>0) && (ncols>0) )
  {
    if ( VSsetfields( vdata_id, storagetype.c_str() ) < 0 )
    {
      cout << dataname << endl;
      ostringstream os;
      os << "Cannot find the field " << storagetype << " in file " << filename
         << "\n" << "Maybe the file contains data of other type";
      throw runtime_error(os.str());
    }
  }
}
 
 
 
 
void binfile_read_end(
              int&      vdata_id,
        const String&   filename,
        const String&   dataname )
{
  if ( VSdetach( vdata_id ) < 0 )
  {
    ostringstream os;
    os << "Cannot detach the field " << dataname << " in file " << filename;
    throw runtime_error(os.str());
  }
}
 
 
 
 
void binfile_get_datatype(
              String&   type_in_file,
        const int&      vdata_id )
{
  char   c[50];
  VSgetclass( vdata_id, c );
  type_in_file = c;
}
 
 
 
//   Core read and write functions for binary files
 
 
void binfile_write(
        const int&      fid,
        const String&   filename,
        const String&   dataname,
        const String&   storagetype,
        const String&   atomictype,
        const Index&   nrows,
        const Index&   ncols,
        const uint8*    dpointer )
{ 
  // Check that data types have expected length
  check_data_types();
 
  out3 << "    Writing: " << dataname << "\n";
 
  // Create a new vdata
  int  vdata_id = VSattach( fid, -1, "w" );
  if ( vdata_id < 0 )
  {
    ostringstream os;
    os << "Cannot create a new vdata in file " << filename;
    throw runtime_error(os.str());
  }
 
  // Set name of the vdata
  if ( VSsetname( vdata_id, dataname.c_str() ) < 0 )
  {
    ostringstream os;
    os << "Cannot name the vdata " << dataname << " in file " << filename;
    throw runtime_error(os.str());
  }
 
  // Write data size
  binfile_write_size( filename, dataname, vdata_id, nrows, ncols );
 
  // Create the field
  int    status1, status2;
  //
  if ( atomictype == "INDEX" ) 
  {
    status1 = VSsetclass( vdata_id, "UINT"  );
    status2 = VSfdefine( vdata_id, storagetype.c_str(), DFNT_UINT32, 1);
  }     
  else if ( atomictype == "NUMERIC" ) 
  {
    if ( sizeof(Numeric) == 4 )
    {
      status1 = VSsetclass( vdata_id, "FLOAT"  );
      status2 = VSfdefine( vdata_id, storagetype.c_str(), DFNT_FLOAT32, 1); 
    }
    else
    {
      status1 = VSsetclass( vdata_id, "DOUBLE"  );
      status2 = VSfdefine( vdata_id, storagetype.c_str(), DFNT_FLOAT64, 1);
    }
  }
 
  else if ( atomictype == "CHAR" ) 
  {
    status1 = VSsetclass( vdata_id, "CHAR"  );
    status2 = VSfdefine( vdata_id, storagetype.c_str(), DFNT_CHAR, 1);     
  }
  else
  {
    ostringstream os;
    os << "The atomic data type " << atomictype << " is not handled";
    throw runtime_error(os.str());
  }
 
  // Handle error
  if ( status1 < 0 )
  {
    ostringstream os;
    os << "Cannot set class on " << dataname << " in file "<<filename;
    throw runtime_error(os.str());
  }
  if ( status2 < 0 )
  {
    ostringstream os;
    os << "Cannot create the field " << storagetype << " in file "<<filename;
    throw runtime_error(os.str());
  }
 
  // Finalize the definition of the field
  if ( VSsetfields( vdata_id, storagetype.c_str() ) < 0 )
  {
    ostringstream os;
    os << "Cannot set the field " << storagetype << " in file " << filename;
    throw runtime_error(os.str());
  }
 
  // Write data (if not empty)
  if ( (nrows>0) && (ncols>0) )
  {
    // Do actual writing
    const Index   nout = nrows*ncols;
    Index ndone = VSwrite( vdata_id, dpointer, nout, FULL_INTERLACE );
    if ( ndone != nout )
    {
      ostringstream os;
      os << "Could not write all data to field " << storagetype << "in file "
         << filename << "\nOut of memory?";
      throw runtime_error(os.str());
    }
  }
 
  // Detach the vdata
  if ( VSdetach( vdata_id ) < 0 )
  {
    ostringstream os;
    os << "Cannot detach the vdata " << dataname << " in file " << filename;
    throw runtime_error(os.str());
  }
}
 
 
 
 
void binfile_read1(
              ArrayOfIndex&   x,
        const int&            vdata_id,
        const Index&         n,
        const String&         /* filename */,
        const String&         dataname )
{
  // Check that data types have expected length
  check_data_types();
 
  out3 << "    Reading: " << dataname << "\n";
 
  // Get the data type of the data to read
  String type_in_file;
  binfile_get_datatype( type_in_file, vdata_id );
 
  // Reallocate x
  x.resize(n);
 
  if ( n > 0 )
  {
    // Do reading and copy data
    if ( type_in_file == "UINT" )
      //
      VSread( vdata_id, (uint8*)&x[0], n, FULL_INTERLACE );
      /*
    {
      Index  a[n];
      VSread( vdata_id, (uint8*)a, n, FULL_INTERLACE );
      for ( Index i=0; i<n; i++ )
        x[i] = a[i];
    }
      */
 
    else
    {
      ostringstream os;
      os << "Files with data type " << type_in_file << " are not handled";
      throw runtime_error(os.str());
    }
  }
}
 
 
 
 
void binfile_read2(
              Matrix&   x,
        const int&      vdata_id,
        const Index&   nrows,
        const Index&   ncols,
        const String&   /* filename */,
        const String&   dataname )
{
  // Check that data types have expected length
  check_data_types();
 
  out3 << "    Reading: " << dataname << "\n";
 
  // Get the data type of the data to read
  String type_in_file;
  binfile_get_datatype( type_in_file, vdata_id );
 
  // Reallocate x
  x.resize(nrows,ncols);
 
  if ( (nrows > 0) && (ncols > 0) )
  {
    // Do reading and copy data
    if ( type_in_file == "FLOAT" )
 
      if ( sizeof(Numeric) == 4 )
        //
        VSread( vdata_id, (uint8*)&x(0,0), nrows*ncols, FULL_INTERLACE );
 
      else
      {
        float *a = new float[nrows*ncols];
        Index i,j,j0;
        VSread( vdata_id, (uint8*)a, nrows*ncols, FULL_INTERLACE );
        for ( i=0; i<nrows; i++ )
        {
                j0 = i*ncols;
                for ( j=0; j<ncols; j++ )
                  x(i,j) = a[j0+j];
        }
        delete[] a;
      }
  
    else if ( type_in_file == "DOUBLE" )
 
      if ( sizeof(Numeric) == 8 )
        //
        VSread( vdata_id, (uint8*)&x(0,0), nrows*ncols, FULL_INTERLACE );
 
      else
      {
        double *a = new double[nrows*ncols];
        Index i,j,j0;
        VSread( vdata_id, (uint8*)a, nrows*ncols, FULL_INTERLACE );
        for ( i=0; i<nrows; i++ )
        {
                j0 = i*ncols;
                for ( j=0; j<ncols; j++ )
                   x(i,j) = a[j0+j];
        }
        delete[] a;
      }
  
    else
    {
      ostringstream os;
      os << "Files with data type " << type_in_file << " are not handled";
      throw runtime_error(os.str());
    }
  }
}
 
 
 
 
void binfile_read3(
              String&   x,
        const int&      vdata_id,
        const Index&   n,
        const String&  /* filename */,
        const String&   dataname )
{
  // Check that data types have expected length
  check_data_types();
 
  out3 << "    Reading: " << dataname << "\n";
 
  // Get the data type of the data to read
  String type_in_file;
  binfile_get_datatype( type_in_file, vdata_id );
 
  // Reallocate x
  x.resize(n);
 
  if ( n > 0 )
  {
    // Do reading and copy data
    if ( type_in_file == "CHAR" )
      //
      VSread( vdata_id, (uint8*)&x[0], n, FULL_INTERLACE );
 
    /*
    {
      char  a[n];
      VSread( vdata_id, (uint8*)a, n, FULL_INTERLACE );
      for ( Index i=0; i<n; i++ )
        x[i] = a[i];
    }
    */
    else
    {
      ostringstream os;
      os << "Files with data type " << type_in_file << " are not handled";
      throw runtime_error(os.str());
    }
  }
}
 
 
 
//   Functions to read and write binary data for ARTS data types
 
 
void binfile_write_index(
        const String&   filename,
        const int&      fid,
        const Index&   x,
        const String&   dataname )
{
  /*
  Index  a[1];
  a[0] = x;
  binfile_write( fid,  filename, dataname, "SCALAR", "INDEX", 1, 1, 
                                                                (uint8*)a );
  */
  binfile_write( fid,  filename, dataname, "SCALAR", "INDEX", 1, 1, 
                                                               (uint8*)&x );
}
 
 
 
 
void binfile_read_index(
              Index&   x,
        const String&   filename,
        const int&      fid,
        const String&   dataname )
{
  int     vdata_id;
  Index  nrows, ncols;
  ArrayOfIndex  a;
 
  binfile_read_init( vdata_id, nrows, ncols, fid, filename, dataname, 
                                                           "SCALAR", 1, 1 );
  binfile_read1( a, vdata_id, nrows, filename, dataname );
  x = a[0];
  binfile_read_end( vdata_id, filename, dataname );
}
 
 
 
 
void binfile_write_numeric(
        const String&   filename,
        const int&      fid,
        const Numeric&  x,
        const String&   dataname )
{
  //Numeric  a[1];
  //a[0] = x;
  binfile_write( fid,  filename, dataname, "SCALAR", "NUMERIC", 1, 1, 
                                                               (uint8*)&x );
}
 
 
 
 
void binfile_read_numeric(
              Numeric&  x,
        const String&   filename,
        const int&      fid,
        const String&   dataname )
{
  int     vdata_id;
  Index  nrows, ncols;
  Matrix  a;
 
  binfile_read_init( vdata_id, nrows, ncols, fid, filename, dataname, 
                                                           "SCALAR", 1, 1 );
  binfile_read2( a, vdata_id, nrows, ncols, filename, dataname );
  x = a(0,0);
  binfile_read_end( vdata_id, filename, dataname );
}
 
 
 
 
void binfile_write_vector(
        const String&   filename,
        const int&      fid,
        const Vector&   x,
        const String&   dataname )
{
  const Index  n = x.nelem();
  
  Numeric *a = new Numeric[n];
  for ( Index i=0; i<n; i++ )
    a[i] = x[i];
  
  binfile_write( fid,  filename, dataname, "VECTOR", "NUMERIC", n, 1, 
                                                               (uint8*)a );
 
  delete a;
}
 
 
 
 
void binfile_read_vector(
              Vector&   x,
        const String&   filename,
        const int&      fid,
        const String&   dataname )
{
  int     vdata_id;
  Index  nrows, ncols;
  Matrix  a;
 
  binfile_read_init( vdata_id, nrows, ncols, fid, filename, dataname, 
                                                           "VECTOR", 0, 1 );
  binfile_read2( a, vdata_id, nrows, ncols, filename, dataname );
  x.resize(nrows);
  for ( Index i=0; i<nrows; i++ )
    x[i] = a(i,0);
  binfile_read_end( vdata_id, filename, dataname );
}
 
 
 
 
void binfile_write_matrix(
        const String&   filename,
        const int&      fid,
        const Matrix&   x,
        const String&   dataname )
{
  const Index  nrows = x.nrows();
  const Index  ncols = x.ncols();
 
  Numeric *a = new Numeric[nrows*ncols];
  for ( Index r=0; r<nrows; r++ )
    for ( Index c=0; c<ncols; c++ )
      a[r*ncols+c] = x(r,c);
 
  binfile_write( fid,  filename, dataname, "MATRIX", "NUMERIC", nrows, ncols, 
                 (uint8*)a );
  delete a;
}
 
 
 
 
void binfile_read_matrix(
              Matrix&   x,
        const String&   filename,
        const int&      fid,
        const String&   dataname )
{
  int     vdata_id;
  Index  nrows, ncols;
 
  binfile_read_init( vdata_id, nrows, ncols, fid, filename, dataname, 
                                                           "MATRIX", 0, 0 );
  binfile_read2( x, vdata_id, nrows, ncols, filename, dataname );
  binfile_read_end( vdata_id, filename, dataname );
}
       
 
 
 
void binfile_write_indexarray(
        const String&         filename,
        const int&            fid,
        const ArrayOfIndex&   x,
        const String&         dataname )
{
  const Index  n = x.nelem();
 
  /*
  Index a[n];
  for ( Index i=0; i<n; i++ )
    a[i] = x[i];
  binfile_write( fid,  filename, dataname, "ARRAY", "INDEX", n, 1, 
                                                                (uint8*)a );
  */
  binfile_write( fid,  filename, dataname, "ARRAY", "INDEX", n, 1, 
                                                               (uint8*)&x[0] );
}
 
 
 
 
void binfile_read_indexarray(
              ArrayOfIndex&   x,
        const String&         filename,
        const int&            fid,
        const String&         dataname )
{
  int     vdata_id;
  Index  nrows, ncols;
 
  binfile_read_init( vdata_id, nrows, ncols, fid, filename, dataname, 
                                                           "ARRAY", 0, 1 );
  binfile_read1( x, vdata_id, nrows, filename, dataname );
  binfile_read_end( vdata_id, filename, dataname );
}
 
 
 
 
void binfile_write_vectorarray(
        const String&          filename,
        const int&             fid,
        const ArrayOfVector&   x,
        const String&          dataname )
{
  const Index  n = x.nelem();
 
  // Write number of vectors
  binfile_write_index( filename, fid, n, "N_"+dataname );  
 
  // Write each matrix seperately
  for (Index i=0; i<n; i++ )
  {
    ostringstream os;
    os << dataname << i;
    binfile_write_vector( filename, fid, x[i], os.str() );    
  }
}
 
 
 
 
void binfile_read_vectorarray(
              ArrayOfVector&   x,
        const String&          filename,
        const int&             fid,
        const String&          dataname )
{
  // Read the number of vectors
  Index  n;
  binfile_read_index( n, filename, fid, "N_"+dataname );  
 
  // Reallocate x and read vectors
  x.resize(n);
  for (Index i=0; i<n; i++ )
  {
    ostringstream os;
    os << dataname << i;
    binfile_read_vector( x[i], filename, fid, os.str() );    
  }
}
 
 
 
 
void binfile_write_matrixarray(
        const String&          filename,
        const int&             fid,
        const ArrayOfMatrix&   x,
        const String&          dataname )
{
  const Index  n = x.nelem();
 
  // Write number of matrices
  binfile_write_index( filename, fid, n, "N_"+dataname );  
 
  // Write each matrix seperately
  for ( Index i=0; i<n; i++ )
  {
    ostringstream os;
    os << dataname << i;
    binfile_write_matrix( filename, fid, x[i], os.str() );    
  }
}
 
 
 
 
void binfile_read_matrixarray(
              ArrayOfMatrix&   x,
        const String&          filename,
        const int&             fid,
        const String&          dataname )
{
  // Read the number of matrices
  Index  n;
  binfile_read_index( n, filename, fid, "N_"+dataname );  
 
  // Reallocate x and read matrices
  x.resize(n);
  for (Index i=0; i<n; i++ )
  {
    ostringstream os;
    os << dataname << i;
    binfile_read_matrix( x[i], filename, fid, os.str() );    
  }
}
 
 
 
 
void binfile_write_String(
        const String&   filename,
        const int&      fid,
        const String&   s,
        const String&   dataname )
{
  const Index  n = (Index)s.length();
 
  binfile_write( fid,  filename, dataname, "STRING", "CHAR", n, 1, 
                                                           (uint8*)s.c_str() );
}
 
 
 
 
void binfile_read_String(
              String&   x,
        const String&   filename,
        const int&      fid,
        const String&   dataname )
{
  int     vdata_id;
  Index  nrows, ncols;
 
  binfile_read_init( vdata_id, nrows, ncols, fid, filename, dataname, 
                                                           "STRING", 0, 1 );
  binfile_read3( x, vdata_id, nrows, filename, dataname );
  binfile_read_end( vdata_id, filename, dataname );
}
 
 
 
 
void binfile_write_Stringarray(
        const String&          filename,
        const int&             fid,
        const ArrayOfString&   x,
        const String&          dataname )
{
  const Index  n = x.nelem();
 
  // Write number of matrices
  binfile_write_index( filename, fid, n, "N_"+dataname );  
 
  // Write each String seperately
  for ( Index i=0; i<n; i++ )
  {
    ostringstream os;
    os << dataname << i;
    binfile_write_String( filename, fid, x[i], os.str() );    
  }
}
 
 
 
 
void binfile_read_Stringarray(
              ArrayOfString&   x,
        const String&          filename,
        const int&             fid,
        const String&          dataname )
{
  // Read the number of matrices
  Index  n;
  binfile_read_index( n, filename, fid, "N_"+dataname );  
 
  // Reallocate x and read matrices
  x.resize(n);
  for (Index i=0; i<n; i++ )
  {
    ostringstream os;
    os << dataname << i;
    binfile_read_String( x[i], filename, fid, os.str() );    
  }
}
 
#endif // HDF_SUPPORT
 
 
 
//   The workspace methods (sorted after workspace variable)
 
//=== Index ============================================================
 
// This function shall be modified to handle Index
#ifdef HDF_SUPPORT
void IndexWriteBinary(
        const Index&      v,
        const String&   var_name,
        const String&   f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_out( fid, filename );
  binfile_write_index( filename, fid, v, "Index" );
  binfile_close( fid, filename );
}
#else
void IndexWriteBinary(
        const Index&    /* v */,
        const String&   /* var_name */,
        const String&   /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
// This function shall be modified to handle Index
#ifdef HDF_SUPPORT
void IndexReadBinary(
              Index&      v,
        const String&   var_name,
        const String&   f )
{
  Index vtemp;  //To be removed
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_in( fid, filename );
  binfile_read_index( vtemp, filename, fid, "Index" );
  v = (int) vtemp;
  binfile_close( fid, filename );
}
#else
void IndexReadBinary(
              Index&    /* v */,
        const String&   /* var_name */,
        const String&   /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
//=== NUMERIC ==========================================================
 
#ifdef HDF_SUPPORT
void NumericWriteBinary(
        const Numeric&  v,
        const String&   var_name,
        const String&   f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_out( fid, filename );
  binfile_write_numeric( filename, fid, v, "NUMERIC" );
  binfile_close( fid, filename );
}
#else
void NumericWriteBinary(
        const Numeric&  /* v */,
        const String&   /* var_name */,
        const String&   /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
#ifdef HDF_SUPPORT
void NumericReadBinary(
              Numeric&  v,
        const String&   var_name,
        const String&   f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_in( fid, filename );
  binfile_read_numeric( v, filename, fid, "NUMERIC" );
  binfile_close( fid, filename );
}
#else
void NumericReadBinary(
              Numeric&  /* v */,
        const String&   /* var_name */,
        const String&   /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
//=== Vector ==========================================================
 
#ifdef HDF_SUPPORT
void VectorWriteBinary(
        const Vector&  v,
        const String&  var_name,
        const String&  f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_out( fid, filename );
  binfile_write_vector( filename, fid, v, "VECTOR" );
  binfile_close( fid, filename );
}
#else
void VectorWriteBinary(
        const Vector&   /* v */,
        const String&   /* var_name */,
        const String&   /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
#ifdef HDF_SUPPORT
void VectorReadBinary(
              Vector&  v,
        const String&  var_name,
        const String&  f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_in( fid, filename );
  binfile_read_vector( v, filename, fid, "VECTOR" );
  binfile_close( fid, filename );
}
#else
void VectorReadBinary(
              Vector&  /* v */,
        const String&   /* var_name */,
        const String&   /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
//=== Matrix ==========================================================
 
#ifdef HDF_SUPPORT
void MatrixWriteBinary(
        const Matrix&  v,
        const String&  var_name,
        const String&  f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_out( fid, filename );
  binfile_write_matrix( filename, fid, v, "MATRIX" );
  binfile_close( fid, filename );
}
#else
void MatrixWriteBinary(
        const Matrix&   /* v */,
        const String&   /* var_name */,
        const String&   /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
#ifdef HDF_SUPPORT
void MatrixReadBinary(
              Matrix&  v,
        const String&  var_name,
        const String&  f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_in( fid, filename );
  binfile_read_matrix( v, filename, fid, "MATRIX" );
  binfile_close( fid, filename );
}
#else
void MatrixReadBinary(
              Matrix&   /* v */,
        const String&   /* var_name */,
        const String&   /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
//=== ArrayOfIndex =====================================================
 
#ifdef HDF_SUPPORT
void ArrayOfIndexWriteBinary(
        const ArrayOfIndex&  v,
        const String&        var_name,
        const String&        f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_out( fid, filename );
  binfile_write_indexarray( filename, fid, v, "INDEXARRAY" );
  binfile_close( fid, filename );
}
#else
void ArrayOfIndexWriteBinary(
        const ArrayOfIndex&   /* v */,
        const String&         /* var_name */,
        const String&         /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
#ifdef HDF_SUPPORT
void ArrayOfIndexReadBinary(
              ArrayOfIndex&  v,
        const String&        var_name,
        const String&        f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_in( fid, filename );
  binfile_read_indexarray( v, filename, fid, "INDEXARRAY" );
  binfile_close( fid, filename );
}
#else
void ArrayOfIndexReadBinary(
              ArrayOfIndex&   /* v */,
        const String&         /* var_name */,
        const String&         /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
//=== ArrayOfVector ====================================================
 
#ifdef HDF_SUPPORT
void ArrayOfVectorWriteBinary(
        const ArrayOfVector&  v,
        const String&         var_name,
        const String&         f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_out( fid, filename );
  binfile_write_vectorarray( filename, fid, v, "VECTOR" );
  binfile_close( fid, filename );
}
#else
void ArrayOfVectorWriteBinary(
        const ArrayOfVector&  /* v */,
        const String&         /* var_name */,
        const String&         /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
#ifdef HDF_SUPPORT
void ArrayOfVectorReadBinary(
              ArrayOfVector&  v,
        const String&         var_name,
        const String&         f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_in( fid, filename );
  binfile_read_vectorarray( v, filename, fid, "VECTOR" );
  binfile_close( fid, filename );
}
#else
void ArrayOfVectorReadBinary(
              ArrayOfVector&  /* v */,
        const String&         /* var_name */,
        const String&         /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
//=== ArrayOfMatrix ====================================================
 
#ifdef HDF_SUPPORT
void ArrayOfMatrixWriteBinary(
        const ArrayOfMatrix&  v,
        const String&         var_name,
        const String&         f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_out( fid, filename );
  binfile_write_matrixarray( filename, fid, v, "MATRIX" );
  binfile_close( fid, filename );
}
#else
void ArrayOfMatrixWriteBinary(
        const ArrayOfMatrix&  /* v */,
        const String&         /* var_name */,
        const String&         /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
#ifdef HDF_SUPPORT
void ArrayOfMatrixReadBinary(
              ArrayOfMatrix&  v,
        const String&         var_name,
        const String&         f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_in( fid, filename );
  binfile_read_matrixarray( v, filename, fid, "MATRIX" );
  binfile_close( fid, filename );
}
#else
void ArrayOfMatrixReadBinary(
              ArrayOfMatrix&  /* v */,
        const String&         /* var_name */,
        const String&         /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
//=== STRING ===============================================================
 
#ifdef HDF_SUPPORT
void StringWriteBinary(
        const String&  v,
        const String&  var_name,
        const String&  f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_out( fid, filename );
  binfile_write_String( filename, fid, v, "STRING" );
  binfile_close( fid, filename );
}
#else
void StringWriteBinary(
        const String&  /* v */,
        const String&  /* var_name */,
        const String&  /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
#ifdef HDF_SUPPORT
void StringReadBinary(
              String&  v,
        const String&  var_name,
        const String&  f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_in( fid, filename );
  binfile_read_String( v, filename, fid, "STRING" );
  binfile_close( fid, filename );
}
#else
void StringReadBinary(
              String&  /* v */,
        const String&  /* var_name */,
        const String&  /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
//=== ArrayOfString ====================================================
 
#ifdef HDF_SUPPORT
void ArrayOfStringWriteBinary(
        const ArrayOfString&  v,
        const String&         var_name,
        const String&         f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_out( fid, filename );
  binfile_write_Stringarray( filename, fid, v, "STRING" );
  binfile_close( fid, filename );
}
#else
void ArrayOfStringWriteBinary(
        const ArrayOfString&  /* v */,
        const String&         /* var_name */,
        const String&         /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
#ifdef HDF_SUPPORT
void ArrayOfStringReadBinary(
              ArrayOfString&  v,
        const String&         var_name,
        const String&         f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
  binfile_open_in( fid, filename );
  binfile_read_Stringarray( v, filename, fid, "STRING" );
  binfile_close( fid, filename );
}
#else
void ArrayOfStringReadBinary(
              ArrayOfString&  /* v */,
        const String&         /* var_name */,
        const String&         /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
//=== LOS ==================================================================
 
#ifdef HDF_SUPPORT
void LosWriteBinary(
        const Los&      los,
        const String&   var_name,
        const String&   f )
{
  int    fid;
  String filename = f;
  filename_bin( filename, var_name );
 
  binfile_open_out( fid, filename );
  binfile_write_vectorarray( filename, fid, los.p,      "LOS.P" );
  binfile_write_vectorarray( filename, fid, los.psi,    "LOS.PSI" );
  binfile_write_vectorarray( filename, fid, los.z,      "LOS.Z" );
  binfile_write_vector(      filename, fid, los.l_step, "LOS.L_STEP" );
  binfile_write_indexarray(  filename, fid, los.ground, "LOS.GROUND" );
  binfile_write_indexarray(  filename, fid, los.start,  "LOS.START" );
  binfile_write_indexarray(  filename, fid, los.stop,   "LOS.STOP" );
  binfile_close( fid, filename );
}
#else
void LosWriteBinary(
        const Los&     /* v */,
        const String&  /* var_name */,
        const String&  /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT
 
 
 
 
#ifdef HDF_SUPPORT
void LosReadBinary(
              Los&      los,
        const String&   var_name,
        const String&   f )
{
  int   fid;
  String filename = f;
  filename_bin( filename, var_name );
 
  binfile_open_in( fid, filename );
  binfile_read_vectorarray( los.p,      filename, fid, "LOS.P" );
  binfile_read_vectorarray( los.psi,    filename, fid, "LOS.PSI" );
  binfile_read_vectorarray( los.z,      filename, fid, "LOS.Z" );
  binfile_read_vector(      los.l_step, filename, fid, "LOS.L_STEP" );
  binfile_read_indexarray(  los.ground, filename, fid, "LOS.GROUND" );
  binfile_read_indexarray(  los.start,  filename, fid, "LOS.START" );
  binfile_read_indexarray(  los.stop,   filename, fid, "LOS.STOP" );
  binfile_close( fid, filename );
}
#else
void LosReadBinary(
              Los&     /* v */,
        const String&  /* var_name */,
        const String&  /* f */ )
{
  throw runtime_error("This method is only available when arts is compiled with HDF support.");
}
#endif // HDF_SUPPORT