m_cia.cc File Reference

Workspace methods for HITRAN CIA data. More...

#include "absorption.h"
#include "arts.h"
#include "auto_md.h"
#include "cia.h"
#include "file.h"
#include "messages.h"
#include "physics_funcs.h"
#include "xml_io.h"

Go to the source code of this file.

Functions
void	abs_xsec_per_speciesAddCIA (ArrayOfMatrix &abs_xsec_per_species, ArrayOfArrayOfMatrix &dabs_xsec_per_species_dx, const ArrayOfArrayOfSpeciesTag &abs_species, const ArrayOfRetrievalQuantity &jacobian_quantities, const ArrayOfIndex &abs_species_active, const Vector &f_grid, const Vector &abs_p, const Vector &abs_t, const Matrix &abs_vmrs, const ArrayOfCIARecord &abs_cia_data, const Numeric &T_extrapolfac, const Index &robust, const Verbosity &verbosity)
	WORKSPACE METHOD: abs_xsec_per_speciesAddCIA. More...
void	CIARecordReadFromFile (CIARecord &cia_record, const String &species_tag, const String &filename, const Verbosity &verbosity)
	WORKSPACE METHOD: CIARecordReadFromFile. More...
void	abs_cia_dataAddCIARecord (ArrayOfCIARecord &abs_cia_data, const CIARecord &cia_record, const Index &clobber, const Verbosity &)
	WORKSPACE METHOD: abs_cia_dataAddCIARecord. More...
void	abs_cia_dataReadFromCIA (ArrayOfCIARecord &abs_cia_data, const ArrayOfArrayOfSpeciesTag &abs_species, const String &catalogpath, const Verbosity &verbosity)
	WORKSPACE METHOD: abs_cia_dataReadFromCIA. More...
void	abs_cia_dataReadFromXML (ArrayOfCIARecord &abs_cia_data, const ArrayOfArrayOfSpeciesTag &abs_species, const String &filename, const Verbosity &verbosity)
	WORKSPACE METHOD: abs_cia_dataReadFromXML. More...
void	CIAInfo (const String &catalogpath, const ArrayOfString &cia_tags, const Verbosity &verbosity)
	WORKSPACE METHOD: CIAInfo. More...

Variables
const Numeric	SPEED_OF_LIGHT

Detailed Description

Workspace methods for HITRAN CIA data.

Author

Oliver Lemke olemk.nosp@m.e@co.nosp@m.re-du.nosp@m.mp.i.nosp@m.nfo

Stefan Buehler

Date

2012-12-04

Definition in file m_cia.cc.

Function Documentation

abs_cia_dataAddCIARecord()

void abs_cia_dataAddCIARecord	(	ArrayOfCIARecord &	abs_cia_data,
		const CIARecord &	cia_record,
		const Index &	clobber,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: abs_cia_dataAddCIARecord.

Takes CIARecord as input and appends the results in the appropriate place.

If CIARecord has same species as species in abs_cia_data, then the array position is used to append all of the CIARecord into the array. If clobber evaluates as true, cia_record overwrites the appropriate abs_cia_data. If species in cia_record are not in abs_cia_data, the CIARecord is pushed back.

Author

Richard Larsson

Parameters

[in,out]	abs_cia_data	WS Input/Output
[in]	cia_record	Generic Input
[in]	clobber	Generic Input (Default: "0")

Definition at line 295 of file m_cia.cc.

References ARTS::Var::abs_cia_data(), cia_get_index(), and CIARecord::Species().

Referenced by abs_cia_dataAddCIARecord_g().

abs_cia_dataReadFromCIA()

void abs_cia_dataReadFromCIA	(	ArrayOfCIARecord &	abs_cia_data,
		const ArrayOfArrayOfSpeciesTag &	abs_species,
		const String &	catalogpath,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: abs_cia_dataReadFromCIA.

Read data from a CIA data file for all CIA molecules defined in abs_species.

The units in the HITRAN file are: Frequency: cm^(-1) Binary absorption cross-section: cm^5 molec^(-2)

Upon reading we convert this to the ARTS internal SI units of Hz and m^5 molec^(-2).

Author

Oliver Lemke

Parameters

[out]	abs_cia_data	WS Output
[in]	abs_species	WS Input
[in]	catalogpath	Generic Input

Definition at line 313 of file m_cia.cc.

References ARTS::Var::abs_cia_data(), ARTS::Var::abs_species(), cia_get_index(), CIASecond, iso(), list_directory(), Array< base >::nelem(), Species, species_name_from_species_index(), and SpeciesTag::TYPE_CIA.

Referenced by abs_cia_dataReadFromCIA_g(), and CIAInfo().

abs_cia_dataReadFromXML()

void abs_cia_dataReadFromXML	(	ArrayOfCIARecord &	abs_cia_data,
		const ArrayOfArrayOfSpeciesTag &	abs_species,
		const String &	filename,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: abs_cia_dataReadFromXML.

Read data from a CIA XML file and check that all CIA tags defined in abs_species are present in the file.

The units of the data are described in abs_cia_dataReadFromCIA.

Author

Oliver Lemke

Parameters

[out]	abs_cia_data	WS Output
[in]	abs_species	WS Input
[in]	filename	Generic Input (Default: "")

Definition at line 401 of file m_cia.cc.

References ARTS::Var::abs_cia_data(), ARTS::Var::abs_species(), cia_get_index(), CIASecond, iso(), Species, species_name_from_species_index(), SpeciesTag::TYPE_CIA, ARTS::Var::verbosity(), and xml_read_from_file().

Referenced by abs_cia_dataReadFromXML_g().

abs_xsec_per_speciesAddCIA()

void abs_xsec_per_speciesAddCIA	(	ArrayOfMatrix &	abs_xsec_per_species,
		ArrayOfArrayOfMatrix &	dabs_xsec_per_species_dx,
		const ArrayOfArrayOfSpeciesTag &	abs_species,
		const ArrayOfRetrievalQuantity &	jacobian_quantities,
		const ArrayOfIndex &	abs_species_active,
		const Vector &	f_grid,
		const Vector &	abs_p,
		const Vector &	abs_t,
		const Matrix &	abs_vmrs,
		const ArrayOfCIARecord &	abs_cia_data,
		const Numeric &	T_extrapolfac,
		const Index &	robust,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: abs_xsec_per_speciesAddCIA.

Calculate absorption cross sections per tag group for HITRAN CIA continua.

This interpolates the cross sections from abs_cia_data.

The robust option is intended only for testing. Do not use for normal runs, since subsequent functions will not be able to deal with NAN values.

Author

Stefan Buehler

Parameters

[in,out]	abs_xsec_per_species	WS Input/Output
[in,out]	dabs_xsec_per_species_dx	WS Input/Output
[in]	abs_species	WS Input
[in]	jacobian_quantities	WS Input
[in]	abs_species_active	WS Input
[in]	f_grid	WS Input
[in]	abs_p	WS Input
[in]	abs_t	WS Input
[in]	abs_vmrs	WS Input
[in]	abs_cia_data	WS Input
[in]	T_extrapolfac	Generic Input (Default: "0.5")
[in]	robust	Generic Input (Default: "0")

Definition at line 41 of file m_cia.cc.

References ARTS::Var::abs_cia_data(), ARTS::Var::abs_p(), ARTS::Var::abs_species(), ARTS::Var::abs_species_active(), ARTS::Var::abs_t(), ARTS::Var::abs_vmrs(), ARTS::Var::abs_xsec_per_species(), cia_get_index(), SpeciesTag::CIADataset(), SpeciesTag::CIASecond(), CREATE_OUTS, do_frequency_jacobian(), do_temperature_jacobian(), equivalent_propmattype_indexes(), CIARecord::Extract(), ARTS::Var::f_grid(), find_first_species_tg(), frequency_perturbation(), ARTS::Var::jacobian_quantities(), CIARecord::MoleculeName(), SpeciesTag::Name(), ConstMatrixView::ncols(), ConstMatrixView::nrows(), Vector::resize(), SpeciesTag::Species(), CIARecord::Species(), supports_CIA(), temperature_perturbation(), SpeciesTag::Type(), SpeciesTag::TYPE_CIA, and ARTS::Var::verbosity().

Referenced by ARTS::Agenda::abs_xsec_agenda_standard_with_cia(), and abs_xsec_per_speciesAddCIA_g().

CIAInfo()

void CIAInfo	(	const String &	catalogpath,
		const ArrayOfString &	cia_tags,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: CIAInfo.

Display information about the given CIA tags. The CIA tags shown are in the same format as needed by abs_speciesSet.

Author

Oliver Lemke

Parameters

[in]	catalogpath	Generic Input
[in]	cia_tags	Generic Input

Definition at line 452 of file m_cia.cc.

References abs_cia_dataReadFromCIA(), CREATE_OUT1, Array< base >::nelem(), Print(), and ARTS::Var::verbosity().

Referenced by CIAInfo_g().

CIARecordReadFromFile()

void CIARecordReadFromFile	(	CIARecord &	cia_record,
		const String &	species_tag,
		const String &	filename,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: CIARecordReadFromFile.

Reads CIARecord from Hitran-style file.

Author

Richard Larsson

Parameters

[out]	cia_record	Generic output
[in]	species_tag	Generic Input
[in]	filename	Generic Input

Definition at line 274 of file m_cia.cc.

References SpeciesTag::CIASecond(), CIARecord::ReadFromCIA(), CIARecord::SetSpecies(), SpeciesTag::Species(), SpeciesTag::Type(), SpeciesTag::TYPE_CIA, and ARTS::Var::verbosity().

Referenced by CIARecordReadFromFile_g().

Variable Documentation

SPEED_OF_LIGHT

const Numeric SPEED_OF_LIGHT

extern