m_nlte.cc File Reference

User interface to NLTE variables and functions. More...

#include "absorption.h"
#include "arts.h"
#include "auto_md.h"
#include "lin_alg.h"
#include "nlte.h"

Go to the source code of this file.

Functions
void	ArrayOfQuantumIdentifierFromLines (ArrayOfQuantumIdentifier &qid, const ArrayOfArrayOfAbsorptionLines &abs_lines_per_species, const Index &global, const Verbosity &)
	WORKSPACE METHOD: ArrayOfQuantumIdentifierFromLines. More...
void	nlte_fieldRescalePopulationLevels (EnergyLevelMap &nlte_field, const Numeric &scale, const Verbosity &)
	WORKSPACE METHOD: nlte_fieldRescalePopulationLevels. More...
void	nlte_fieldForSingleSpeciesNonOverlappingLines (Workspace &ws, EnergyLevelMap &nlte_field, const ArrayOfArrayOfSpeciesTag &abs_species, const ArrayOfArrayOfAbsorptionLines &abs_lines_per_species, const ArrayOfArrayOfGriddedField1 &collision_coefficients, const ArrayOfQuantumIdentifier &collision_line_identifiers, const SpeciesAuxData &isotopologue_ratios, const Agenda &iy_main_agenda, const Agenda &ppath_agenda, const Agenda &iy_space_agenda, const Agenda &iy_surface_agenda, const Agenda &iy_cloudbox_agenda, const Agenda &propmat_clearsky_agenda, const Agenda &, const Tensor4 &vmr_field, const Tensor3 &t_field, const Tensor3 &z_field, const Vector &p_grid, const Index &atmosphere_dim, const Vector &refellipsoid, const Tensor3 &surface_props_data, const Index &nlte_do, const Numeric &df, const Numeric &convergence_limit, const Index &nz, const Index &nf, const Index &dampened, const Index &iteration_limit, const Verbosity &verbosity)
	WORKSPACE METHOD: nlte_fieldForSingleSpeciesNonOverlappingLines. More...
void	collision_coefficientsFromSplitFiles (ArrayOfArrayOfGriddedField1 &collision_coefficients, ArrayOfQuantumIdentifier &collision_line_identifiers, const ArrayOfArrayOfSpeciesTag &abs_species, const String &basename, const Verbosity &verbosity)
	WORKSPACE METHOD: collision_coefficientsFromSplitFiles. More...
void	nlteOff (Index &nlte_do, EnergyLevelMap &nlte_field, ArrayOfQuantumIdentifier &nlte_level_identifiers, const Verbosity &)
	WORKSPACE METHOD: nlteOff. More...

Detailed Description

User interface to NLTE variables and functions.

Author

Richard Larsson

Date

2018-03-07

Definition in file m_nlte.cc.

Function Documentation

ArrayOfQuantumIdentifierFromLines()

void ArrayOfQuantumIdentifierFromLines	(	ArrayOfQuantumIdentifier &	out,
		const ArrayOfArrayOfAbsorptionLines &	abs_lines_per_species,
		const Index &	global,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: ArrayOfQuantumIdentifierFromLines.

Sets an ArrayOfQuantumIdentifier to all levels in abs_lines_per_species with defined quantum numbers

Lines without defined quantum numbers are ignored

Author

Richard Larsson

Parameters

[out]	out	Generic output
[in]	abs_lines_per_species	WS Input
[in]	global	Generic Input (Default: "1")

Definition at line 34 of file m_nlte.cc.

References ARTS::Var::abs_lines_per_species().

Referenced by ArrayOfQuantumIdentifierFromLines_g().

collision_coefficientsFromSplitFiles()

void collision_coefficientsFromSplitFiles	(	ArrayOfArrayOfGriddedField1 &	collision_coefficients,
		ArrayOfQuantumIdentifier &	collision_line_identifiers,
		const ArrayOfArrayOfSpeciesTag &	abs_species,
		const String &	basename,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: collision_coefficientsFromSplitFiles.

Reads collision_coefficients and collision_line_identifiers from location on filesystem with many species. The species in this location must match abs_species. The location must also contain an ArrayOfQuantumIdentifier file ending with qid.xml

Author

Richard Larsson

Parameters

[out]	collision_coefficients	WS Output
[out]	collision_line_identifiers	WS Output
[in]	abs_species	WS Input
[in]	basename	Generic Input (Default: "./")

Definition at line 245 of file m_nlte.cc.

References ARTS::Var::abs_species(), check_collision_line_identifiers(), ARTS::Var::collision_coefficients(), ARTS::Var::collision_line_identifiers(), Array< base >::nelem(), ARTS::Var::verbosity(), and xml_read_from_file().

Referenced by collision_coefficientsFromSplitFiles_g().

nlte_fieldForSingleSpeciesNonOverlappingLines()

void nlte_fieldForSingleSpeciesNonOverlappingLines	(	Workspace &	ws,
		EnergyLevelMap &	nlte_field,
		const ArrayOfArrayOfSpeciesTag &	abs_species,
		const ArrayOfArrayOfAbsorptionLines &	abs_lines_per_species,
		const ArrayOfArrayOfGriddedField1 &	collision_coefficients,
		const ArrayOfQuantumIdentifier &	collision_line_identifiers,
		const SpeciesAuxData &	isotopologue_ratios,
		const Agenda &	iy_main_agenda,
		const Agenda &	ppath_agenda,
		const Agenda &	iy_space_agenda,
		const Agenda &	iy_surface_agenda,
		const Agenda &	iy_cloudbox_agenda,
		const Agenda &	propmat_clearsky_agenda,
		const Agenda &	water_p_eq_agenda,
		const Tensor4 &	vmr_field,
		const Tensor3 &	t_field,
		const Tensor3 &	z_field,
		const Vector &	p_grid,
		const Index &	atmosphere_dim,
		const Vector &	refellipsoid,
		const Tensor3 &	surface_props_data,
		const Index &	nlte_do,
		const Numeric &	df,
		const Numeric &	convergence_limit,
		const Index &	nz,
		const Index &	nf,
		const Index &	dampened,
		const Index &	iteration_limit,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: nlte_fieldForSingleSpeciesNonOverlappingLines.

NLTE field for a simple setup.

This will solve for nlte_field in the input atmosphere. The solver depends on the lines not overlapping and that there is only a single species in the atmosphere.

Author

Richard Larsson

Parameters

[in,out]	ws	Workspace
[in,out]	nlte_field	WS Input/Output
[in]	abs_species	WS Input
[in]	abs_lines_per_species	WS Input
[in]	collision_coefficients	WS Input
[in]	collision_line_identifiers	WS Input
[in]	isotopologue_ratios	WS Input
[in]	iy_main_agenda	WS Input
[in]	ppath_agenda	WS Input
[in]	iy_space_agenda	WS Input
[in]	iy_surface_agenda	WS Input
[in]	iy_cloudbox_agenda	WS Input
[in]	propmat_clearsky_agenda	WS Input
[in]	water_p_eq_agenda	WS Input
[in]	vmr_field	WS Input
[in]	t_field	WS Input
[in]	z_field	WS Input
[in]	p_grid	WS Input
[in]	atmosphere_dim	WS Input
[in]	refellipsoid	WS Input
[in]	surface_props_data	WS Input
[in]	nlte_do	WS Input
[in]	df	Generic Input
[in]	convergence_limit	Generic Input (Default: "1e-6")
[in]	nz	Generic Input
[in]	nf	Generic Input
[in]	dampened	Generic Input
[in]	iteration_limit	Generic Input (Default: "20")

Definition at line 87 of file m_nlte.cc.

References abs, ARTS::Var::abs_lines_per_species(), ARTS::Var::abs_species(), ARTS::Var::atmosphere_dim(), ARTS::Var::collision_coefficients(), ARTS::Var::collision_line_identifiers(), CREATE_OUT2, createAij(), createBij(), createBji(), dampened_statistical_equilibrium_equation(), find_first_unique_in_lower(), ARTS::Var::isotopologue_ratios(), ARTS::Var::iy_cloudbox_agenda(), ARTS::Var::iy_main_agenda(), ARTS::Var::iy_space_agenda(), ARTS::Var::iy_surface_agenda(), joker, ARTS::Var::line_irradiance(), line_irradianceCalcForSingleSpeciesNonOverlappingLinesPseudo2D(), ARTS::Var::line_transmission(), max, Absorption::nelem(), nlines, nlte_collision_factorsCalcFromCoeffs(), ARTS::Var::nlte_do(), ARTS::Var::nlte_field(), nlte_positions_in_statistical_equilibrium_matrix(), ARTS::Var::p_grid(), ARTS::Var::ppath_agenda(), ARTS::Var::propmat_clearsky_agenda(), ARTS::Var::refellipsoid(), set_constant_statistical_equilibrium_matrix(), solve(), statistical_equilibrium_equation(), ARTS::Var::surface_props_data(), ARTS::Var::t_field(), ARTS::Var::verbosity(), ARTS::Var::vmr_field(), ARTS::Var::x(), and ARTS::Var::z_field().

Referenced by nlte_fieldForSingleSpeciesNonOverlappingLines_g().

nlte_fieldRescalePopulationLevels()

void nlte_fieldRescalePopulationLevels	(	EnergyLevelMap &	nlte_field,
		const Numeric &	s,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: nlte_fieldRescalePopulationLevels.

Rescale NLTE field to expected total distribution amongst levels

Author

Richard Larsson

Parameters

[in,out]	nlte_field	WS Input/Output
[in]	s	Generic Input

Definition at line 80 of file m_nlte.cc.

References ARTS::Var::nlte_field().

Referenced by nlte_fieldRescalePopulationLevels_g().

nlteOff()

void nlteOff	(	Index &	nlte_do,
		EnergyLevelMap &	nlte_field,
		ArrayOfQuantumIdentifier &	nlte_level_identifiers,
		const Verbosity &	verbosity
	)

WORKSPACE METHOD: nlteOff.

Disable Non-LTE calculations.

The variables are set as follows: <br> nlte_field : Empty. <br> nlte_level_identifiers : Empty.

Author

Oliver Lemke

Parameters

[out]	nlte_do	WS Output
[out]	nlte_field	WS Output
[out]	nlte_level_identifiers	WS Output

Definition at line 280 of file m_nlte.cc.

References ARTS::Var::nlte_do(), ARTS::Var::nlte_field(), and ARTS::Var::nlte_level_identifiers().

Referenced by nlteOff_g().