m_ppath.cc

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/* Copyright (C) 2002-2012 Patrick Eriksson <Patrick.Eriksson@chalmers.se>
                            
   This program is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by the
   Free Software Foundation; either version 2, or (at your option) any
   later version.
 
   This program is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.
 
   You should have received a copy of the GNU General Public License
   along with this program; if not, write to the Free Software
   Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307,
   USA. */
 
 
 
/*===========================================================================
  ===  File description 
  ===========================================================================*/
 
/*===========================================================================
  === External declarations
  ===========================================================================*/
 
#include <cmath>
#include "arts.h"
#include "auto_md.h"
#include "check_input.h"
#include "geodetic.h"
#include "lin_alg.h"
#include "math_funcs.h"
#include "messages.h"
#include "ppath.h"
#include "special_interp.h"
#include "m_xml.h"
#include "xml_io.h"
#include "refraction.h"
#include "m_general.h"
 
extern const Numeric RAD2DEG;
extern const Numeric DEG2RAD;
 
 
 
/*===========================================================================
  === The functions (in alphabetical order)
  ===========================================================================*/
 
/* Workspace method: Doxygen documentation will be auto-generated */
void ppathCalc(      
          Workspace&      ws,
          Ppath&          ppath,
    const Agenda&         ppath_agenda,
    const Numeric&        ppath_lraytrace,
    const Index&          atmgeom_checked,
    const Tensor3&        t_field,
    const Tensor3&        z_field,
    const Tensor4&        vmr_field,
    const Vector&         f_grid,
    const Index&          cloudbox_on, 
    const Index&          cloudbox_checked,
    const Index&          ppath_inside_cloudbox_do,
    const Vector&         rte_pos,
    const Vector&         rte_los,
    const Vector&         rte_pos2,
    const Verbosity&  )
{
  // Basics
  //
  if( atmgeom_checked != 1 )
    throw runtime_error( "The atmospheric geometry must be flagged to have "
                         "passed a consistency check (atmgeom_checked=1)." );
  if( cloudbox_checked != 1 )
    throw runtime_error( "The cloudbox must be flagged to have "
                         "passed a consistency check (cloudbox_checked=1)." );
 
  ppath_agendaExecute( ws, ppath, ppath_lraytrace, rte_pos, rte_los, rte_pos2,
                       cloudbox_on, ppath_inside_cloudbox_do, t_field, z_field,
                       vmr_field, f_grid, ppath_agenda );
}
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void ppathFromRtePos2(      
          Workspace&      ws,
          Ppath&          ppath,
          Vector&         rte_los,
          Numeric&        ppath_lraytrace,
    const Agenda&         ppath_step_agenda,
    const Index&          atmosphere_dim,
    const Vector&         p_grid,
    const Vector&         lat_grid,
    const Vector&         lon_grid,
    const Tensor3&        t_field,
    const Tensor3&        z_field,
    const Tensor4&        vmr_field,
    const Vector&         f_grid,
    const Vector&         refellipsoid,
    const Matrix&         z_surface,
    const Vector&         rte_pos,
    const Vector&         rte_pos2,
    const Numeric&        za_accuracy,
    const Numeric&        pplrt_factor,
    const Numeric&        pplrt_lowest, 
    const Verbosity&      verbosity )
{
  //--- Check input -----------------------------------------------------------
  if( atmosphere_dim == 2 )
    throw runtime_error( "2D atmospheres not yet handled. Support for negative"
                   " zenith angles needed. Remind me (Patrick) to fix this." );
  //---------------------------------------------------------------------------
 
  // Geometric LOS from rte_pos to rte_pos2
  Vector rte_los_geom;
  rte_losGeometricFromRtePosToRtePos2( rte_los_geom, atmosphere_dim, lat_grid, 
                        lon_grid, refellipsoid, rte_pos, rte_pos2, verbosity );
 
  // Radius of rte_pos and rte_pos2
  const Numeric r1 = pos2refell_r( atmosphere_dim, refellipsoid, lat_grid, 
                                              lon_grid, rte_pos ) + rte_pos[0];
  const Numeric r2 = pos2refell_r( atmosphere_dim, refellipsoid, lat_grid, 
                                            lon_grid, rte_pos2 ) + rte_pos2[0];
 
  // Geometric distance between rte_pos and rte_pos2, effective 2D-lat for
  // rte_pos and and Cartesian coordinates of rte_pos:
  Numeric l12, lat1=0, x1, y1=0, z1;
  if( atmosphere_dim <= 2 )
    { 
      if( atmosphere_dim == 2 )
        { lat1 = rte_pos[1]; }
      distance2D( l12, r1, lat1, r2, rte_pos2[1] ); 
      pol2cart( x1, z1, r1, lat1 );
    } 
  else
    { 
      distance3D( l12, r1, rte_pos[1],  rte_pos[2], 
                       r2, rte_pos2[1], rte_pos2[2] ); 
      sph2cart( x1, y1, z1, r1, rte_pos[1], rte_pos[2] );
    }
 
  // Define remaining variables used in the while-loop below
  //
  // Basic bookkeeping variables
  Numeric za_upp_limit = 180;
  Numeric za_low_limit = 0;
  //
  // Various variables associated with the ppath, and the point of the path
  // closest to the transmitter
  Ppath   ppt;                // "Test ppath"
  Index   ip  = -999;         // Index of closest ppath point
  Numeric dxip, dyip=0, dzip; // Cartesian LOS of the closest ppath point
  //
  // Data for the intersection of the l12-sphere
  Vector  posc(max( Index(2),atmosphere_dim));
  Numeric rc, xc, yc=0, zc;   
 
  CREATE_OUT2;
  CREATE_OUT3;
 
  const Index maxiter=99;
  Vector t_za(maxiter,-999), t_dza(maxiter,-999);
  Index  it = -1;
 
  // Keep trying until ready or ground intersetion determined
  //
  bool  ground = false;
  bool  failed = false;
  Index ntries = 0;
  //
  while( true )
    {
      // Path for present rte_los (no cloudbox!)
      ppath_calc( ws, ppt, ppath_step_agenda, atmosphere_dim, p_grid, lat_grid,
                  lon_grid, t_field, z_field, vmr_field, 
                  f_grid, refellipsoid, z_surface, 0, ArrayOfIndex(0), 
                  rte_pos, rte_los, ppath_lraytrace, 0, verbosity );
 
      // Find the point closest to rte_pos2, on the side towards rte_pos. 
      // We do this by looking at the distance to rte_pos, that should be 
      // as close to l12 as possible, but not exceed it.
      Numeric lip = 99e99;
      ip = ppt.np;
      //
      while( lip >= l12  &&  ip > 0 )
        {
          ip--;
          if( atmosphere_dim <= 2 )
            { distance2D( lip, r1, lat1, ppt.r[ip], ppt.pos(ip,1) ); }
          else
            { distance3D( lip, r1, rte_pos[1], rte_pos[2], 
                          ppt.r[ip], ppt.pos(ip,1), ppt.pos(ip,2) ); }
        }
 
      Numeric za_new, daa=0;
 
      // Surface intersection:
      // Not OK if the ground position is too far from rte_pos2. 
      // (30 km selected to allow misses of smaller size when rte_pos2 is at
      // surface level, but surface interference never OK if rte_pos above TOA)
      if( ppath_what_background(ppt) == 2  &&  ip == ppt.np-1  
                                                           &&  l12-lip > 30e3 )
        { 
          za_new       = rte_los[0] - 1; 
          za_upp_limit = rte_los[0]; 
        }
 
      // Ppath OK
      else
        {
          // Estimate ppath at the distance of l12, and calculate size
          // of "miss" (measured in diffference in geometric angles)
          Vector  los;
          Numeric dza;          
          if( atmosphere_dim <= 2 )
            { 
              // Convert pos and los for point ip to cartesian coordinates
              Numeric xip, zip;
              poslos2cart( xip, zip, dxip, dzip, ppt.r[ip], ppt.pos(ip,1), 
                                                              ppt.los(ip,0) );
              // Find where the extension from point ip crosses the l12 
              // sphere: point c
              Numeric latc;
              line_circle_intersect( xc, zc, xip, zip, dxip, dzip, x1, z1, l12);
              cart2pol( rc, latc, xc, zc, ppt.pos(ip,1), ppt.los(ip,0) );
              posc[1] = latc;
              posc[0] = rc - pos2refell_r( atmosphere_dim, refellipsoid, 
                                                    lat_grid, lon_grid, posc );
            }
          else
            { 
              // Convert pos and los for point ip to cartesian coordinates
              Numeric xip, yip, zip;
              poslos2cart( xip, yip, zip, dxip, dyip, dzip, ppt.r[ip], 
                           ppt.pos(ip,1), ppt.pos(ip,2), 
                           ppt.los(ip,0), ppt.los(ip,1) );
              // Find where the extension from point ip crosses the l12 
              // sphere: point c
              Numeric latc, lonc;
              line_sphere_intersect( xc, yc, zc, xip, yip, zip, 
                                           dxip, dyip, dzip, x1, y1, z1, l12 );
              cart2sph( rc, latc, lonc, xc, yc, zc, ppt.pos(ip,1), 
                           ppt.pos(ip,2), ppt.los(ip,0), ppt.los(ip,1) );
              posc[1] = latc;
              posc[2] = lonc;
              posc[0] = rc - pos2refell_r( atmosphere_dim, refellipsoid, 
                                                    lat_grid, lon_grid, posc );
            }
          //
          rte_losGeometricFromRtePosToRtePos2( los, atmosphere_dim, 
                  lat_grid, lon_grid, refellipsoid, rte_pos, posc, verbosity );
          //
          dza = los[0] - rte_los_geom[0];
 
          // Update bookkeeping variables
          it++;
          t_za[it]  = rte_los[0];
          t_dza[it] = dza; 
          /*
            cout << "[\n";
            for( Index k=0; k<=it; k++ )
              { cout << fixed << setprecision(7) << t_za[k] << " " 
                     << t_dza[k] << endl; } cout << "];\n";
          */
          //
          if( dza > 0  &&  rte_los[0] < za_upp_limit )
            { za_upp_limit = rte_los[0]; }
          else if( dza < 0  &&  rte_los[0] > za_low_limit )
            { za_low_limit = rte_los[0]; }
          //cout << za_low_limit << " - " << za_upp_limit << endl;
 
          // Ready ?
          if( abs(dza) <= za_accuracy )
            { 
              break; 
            }
          else if( za_upp_limit - za_low_limit <= za_accuracy/10 )
            { 
              if( max(t_dza) < -10*za_accuracy )
                {
                  ground = true; 
                  out3 << "    Ground intersection determined !!!\n";
                  break; 
                }
              else
                {
                  failed = true; 
                  out3 << "    Zenith angle search range closed !!!\n";
                  break; 
                }
            }
          // Catch non-convergence (just for extra safety, za-range should be
          // closed quicker than this)
          ntries += 1;
          if( ntries >= maxiter )
            { 
              failed = true; 
              out3 << "    Too many iterations !!!\n";
              break; 
            }
 
          // Estimate new angle
          if( it < 1 )
            { za_new = rte_los[0] - dza; }
          else
            {
              // Estimate new angle by linear regression over some of the
              // last calculations
              const Index nfit = min( it+1, (Index)3 );
              const Index i0 = it - nfit + 1;
              Vector p;
              linreg( p, t_za[Range(i0,nfit)], t_dza[Range(i0,nfit)] );
              za_new = -p[0]/p[1];
            }
          //
          if( atmosphere_dim == 3 )
            { daa = los[1] - rte_los_geom[1]; }
        }
 
      // Update rte_los. Use bisection of za_new is basically
      // identical to old angle, or is outside lower or upper
      // limit. Otherwise use reult of linear reg.
      if( isinf(za_new)                                 ||  
          isnan(za_new)                                 ||  
          abs(za_new-rte_los[0]) < 0.99*za_accuracy ||
          za_new <= za_low_limit                        || 
          za_new >= za_upp_limit                         )
        { 
          rte_los[0] = (za_low_limit+za_upp_limit)/2;  
        }
      else
        { 
          rte_los[0] = za_new;
          if( atmosphere_dim == 3 )
            { rte_los[1] -= daa; }
        }
    } // while
  //--------------------------------------------------------------------------
 
  // If failed re-try with a shorter ppath_lraytrace, if not ending up with
  // a too small value.
  if( failed )
    {
      ppath_lraytrace /= pplrt_factor;
 
      if( ppath_lraytrace >= pplrt_lowest )
        {
          out2 << "  Re-start with ppath_lraytrace = " << ppath_lraytrace;
          ppathFromRtePos2( ws, ppath, rte_los, ppath_lraytrace, 
                            ppath_step_agenda, atmosphere_dim,
                            p_grid, lat_grid, lon_grid, t_field, z_field, 
                            vmr_field, f_grid, refellipsoid, 
                            z_surface, rte_pos, rte_pos2, za_accuracy,
                            pplrt_factor, pplrt_lowest, verbosity );
        }
      else
        {
          ppath_init_structure( ppath, atmosphere_dim, 1 ); 
          ppath_set_background( ppath, 0 );
        }
      return;  // --->
    }
 
 
  // Create final ppath. 
  // If ground intersection: Set to length 1 and ground background,  
  // to flag non-OK path
  // Otherwise: Fill path and set background to transmitter
 
  if( ground )
    { 
      ppath_init_structure( ppath, atmosphere_dim, 1 ); 
      ppath_set_background( ppath, 2 );
    }
 
  else
    {
      // Distance between point ip of ppt and posc
      Numeric ll;
      if( atmosphere_dim <= 2 )
        { distance2D( ll, rc, posc[1], ppt.r[ip], ppt.pos(ip,1) ); }
      else
        { distance3D( ll, rc, posc[1], posc[2], ppt.r[ip], ppt.pos(ip,1), 
                                                           ppt.pos(ip,2) ); }
 
      // Last point of ppt closest to rte_pos2. No point to add, maybe
      // calculate start_lstep and start_los:
      if( ip == ppt.np-1 )
        { 
          ppath_init_structure( ppath, atmosphere_dim, ppt.np );
          ppath_copy( ppath, ppt, -1 );
          if( ppath_what_background( ppath ) == 1 )
            { 
              ppath.start_lstep= ll; 
              Numeric d1, d2=0, d3;
          if( atmosphere_dim <= 2 )
            { cart2poslos( d1, d3, ppath.start_los[0], xc, zc, dxip, dzip, 
                           ppt.r[ip]*sin(DEG2RAD*ppt.los(ip,0)),
                           ppt.pos(ip,1), ppt.los(ip,0) ); }
          else
            { cart2poslos( d1, d2, d3, ppath.start_los[0], ppath.start_los[1],
                           xc, yc, zc, dxip, dyip, dzip, 
                           ppt.r[ip]*sin(DEG2RAD*ppt.los(ip,0)),
                           ppt.pos(ip,1), ppt.pos(ip,2), 
                           ppt.los(ip,0), ppt.los(ip,1) ); }
            }
        }
      // rte_pos2 inside the atmosphere (posc entered as end point) 
      else
        {
          ppath_init_structure( ppath, atmosphere_dim, ip+2 );
          ppath_copy( ppath, ppt, ip+1 );
          //
          const Index i = ip+1;
          if( atmosphere_dim <= 2 )
            { cart2poslos( ppath.r[i], ppath.pos(i,1), ppath.los(i,0), xc, zc, 
                           dxip, dzip, ppt.r[ip]*sin(DEG2RAD*ppt.los(ip,0)),
                           ppt.pos(ip,1), ppt.los(ip,0) ); }
          else
            { cart2poslos( ppath.r[i], ppath.pos(i,1), ppath.pos(i,2), 
                           ppath.los(i,0), ppath.los(i,1), xc, yc, zc, 
                           dxip, dyip, dzip, 
                           ppt.r[ip]*sin(DEG2RAD*ppt.los(ip,0)),
                           ppt.pos(ip,1), ppt.pos(ip,2), 
                           ppt.los(ip,0), ppt.los(ip,1) ); }
          //
          ppath.pos(i,joker) = posc;
          ppath.lstep[i-1]   = ll;
          ppath.start_los    = ppath.los(i,joker);
          
          // n by linear interpolation
          assert( ll < ppt.lstep[i-1] );
          const Numeric w = ll/ppt.lstep[i-1];
          ppath.nreal[i]  = (1-w)*ppt.nreal[i-1]  + w*ppt.nreal[i];
          ppath.ngroup[i] = (1-w)*ppt.ngroup[i-1] + w*ppt.ngroup[i];
 
          // Grid positions
          GridPos gp_lat, gp_lon;
          rte_pos2gridpos( ppath.gp_p[i], gp_lat, gp_lon, 
                           atmosphere_dim, p_grid, lat_grid, lon_grid, z_field, 
                           ppath.pos(i,Range(0,atmosphere_dim)) );
          if( atmosphere_dim >= 2 )
            { 
              gridpos_copy( ppath.gp_lat[i], gp_lat );
              if( atmosphere_dim == 3 )
                { gridpos_copy( ppath.gp_lon[i], gp_lon ); }
            }
        }
 
      // Common stuff
      ppath_set_background( ppath, 9 );
      ppath.start_pos = rte_pos2;
    }
}
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void ppathStepByStep(
          Workspace&      ws,
          Ppath&          ppath,
    const Agenda&         ppath_step_agenda,
    const Index&          ppath_inside_cloudbox_do,
    const Index&          atmosphere_dim,
    const Vector&         p_grid,
    const Vector&         lat_grid,
    const Vector&         lon_grid,
    const Tensor3&        t_field,
    const Tensor3&        z_field,
    const Tensor4&        vmr_field,
    const Vector&         f_grid,
    const Vector&         refellipsoid,
    const Matrix&         z_surface,
    const Index&          cloudbox_on, 
    const ArrayOfIndex&   cloudbox_limits,
    const Vector&         rte_pos,
    const Vector&         rte_los,
    const Numeric&        ppath_lraytrace,
    const Verbosity&      verbosity)
{
  ppath_calc( ws, ppath, ppath_step_agenda, atmosphere_dim, p_grid, lat_grid, 
              lon_grid, t_field, z_field, vmr_field, f_grid, 
              refellipsoid, z_surface, cloudbox_on, cloudbox_limits, rte_pos, 
              rte_los, ppath_lraytrace, ppath_inside_cloudbox_do, verbosity );
}
 
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void ppath_stepGeometric(// WS Output:
                         Ppath&           ppath_step,
                         // WS Input:
                         const Index&     atmosphere_dim,
                         const Vector&    lat_grid,
                         const Vector&    lon_grid,
                         const Tensor3&   z_field,
                         const Vector&    refellipsoid,
                         const Matrix&    z_surface,
                         const Numeric&   ppath_lmax,
                         const Verbosity&)
{
  // Input checks here would be rather costly as this function is called
  // many times. So we perform asserts in the sub-functions, but no checks 
  // here.
  
  // A call with background set, just wants to obtain the refractive index for
  // complete ppaths consistent of a single point.
  if( !ppath_what_background( ppath_step ) )
    {
      if( atmosphere_dim == 1 )
        { ppath_step_geom_1d( ppath_step, z_field(joker,0,0), 
                              refellipsoid, z_surface(0,0), ppath_lmax ); }
 
      else if( atmosphere_dim == 2 )
        { ppath_step_geom_2d( ppath_step, lat_grid,
                              z_field(joker,joker,0), refellipsoid, 
                              z_surface(joker,0), ppath_lmax ); }
 
      else if( atmosphere_dim == 3 )
        { ppath_step_geom_3d( ppath_step, lat_grid, lon_grid,
                              z_field, refellipsoid, z_surface, ppath_lmax ); }
 
      else
        { throw runtime_error( "The atmospheric dimensionality must be 1-3." );}
    }
 
  else
    { 
      assert( ppath_step.np == 1 );
      ppath_step.nreal[0]  = 1;
      ppath_step.ngroup[0] = 1;
    }
}
 
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void ppath_stepRefractionBasic(
          Workspace&  ws,
          Ppath&      ppath_step,
    const Agenda&     refr_index_air_agenda,
    const Index&      atmosphere_dim,
    const Vector&     p_grid,
    const Vector&     lat_grid,
    const Vector&     lon_grid,
    const Tensor3&    z_field,
    const Tensor3&    t_field,
    const Tensor4&    vmr_field,
    const Vector&     refellipsoid,
    const Matrix&     z_surface,
    const Vector&     f_grid,
    const Numeric&    ppath_lmax,
    const Numeric&    ppath_lraytrace,
    const Verbosity&)
{
  // Input checks here would be rather costly as this function is called
  // many times. 
  assert( ppath_lraytrace > 0 );
 
  // A call with background set, just wants to obtain the refractive index for
  // complete ppaths consistent of a single point.
  if( !ppath_what_background( ppath_step ) )
    {
      if( atmosphere_dim == 1 )
        { 
          ppath_step_refr_1d( ws, ppath_step, p_grid, 
                              z_field, t_field, vmr_field, 
                              f_grid, refellipsoid, z_surface(0,0), 
                              ppath_lmax, refr_index_air_agenda, 
                              "linear_basic", ppath_lraytrace );
        }
      else if( atmosphere_dim == 2 )
        { 
          ppath_step_refr_2d( ws, ppath_step, p_grid, lat_grid, 
                              z_field, t_field, vmr_field, 
                              f_grid, refellipsoid, z_surface(joker,0), 
                              ppath_lmax, refr_index_air_agenda, 
                              "linear_basic", ppath_lraytrace ); 
        }
      else if( atmosphere_dim == 3 )
        { 
          ppath_step_refr_3d( ws, ppath_step, p_grid, lat_grid, lon_grid, 
                              z_field, t_field, vmr_field, 
                              f_grid, refellipsoid, z_surface, 
                              ppath_lmax, refr_index_air_agenda, 
                              "linear_basic", ppath_lraytrace ); 
        }
      else
        { throw runtime_error( "The atmospheric dimensionality must be 1-3." );}
    }
 
  else
    { 
      assert( ppath_step.np == 1 );
      if( atmosphere_dim == 1 )
        { get_refr_index_1d( ws, ppath_step.nreal[0], ppath_step.ngroup[0], 
                             refr_index_air_agenda, p_grid, refellipsoid, 
                             z_field, t_field, vmr_field, 
                             f_grid, ppath_step.r[0] ); 
        }
      else if( atmosphere_dim == 2 )
        { get_refr_index_2d( ws, ppath_step.nreal[0], ppath_step.ngroup[0], 
                             refr_index_air_agenda, p_grid, lat_grid, 
                             refellipsoid, z_field, t_field, vmr_field, 
                             f_grid, ppath_step.r[0], 
                             ppath_step.pos(0,1) ); 
        }
      else
        { get_refr_index_3d( ws, ppath_step.nreal[0], ppath_step.ngroup[0], 
                             refr_index_air_agenda, p_grid, lat_grid, lon_grid, 
                             refellipsoid, z_field, t_field, vmr_field, 
                             f_grid, ppath_step.r[0], 
                             ppath_step.pos(0,1), ppath_step.pos(0,2) ); 
        }
    }
}
 
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void rte_losSet(
          Vector&    rte_los,
    const Index&     atmosphere_dim,
    const Numeric&   za,
    const Numeric&   aa,
    const Verbosity&)
{
  // Check input
  chk_if_in_range( "atmosphere_dim", atmosphere_dim, 1, 3 );
 
  if( atmosphere_dim == 1 )
    { rte_los.resize(1); }
  else
    {
      rte_los.resize(2);
      rte_los[1] = aa;
    }
  rte_los[0] = za;
}
 
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void rte_losGeometricFromRtePosToRtePos2(
          Vector&         rte_los,
    const Index&          atmosphere_dim,
    const Vector&         lat_grid,
    const Vector&         lon_grid,
    const Vector&         refellipsoid,
    const Vector&         rte_pos,
    const Vector&         rte_pos2,
    const Verbosity& )
{
  // Check input
  chk_rte_pos( atmosphere_dim, rte_pos );
  chk_rte_pos( atmosphere_dim, rte_pos2, true );
 
  // Radius of rte_pos and rte_pos2
  const Numeric r1  = pos2refell_r( atmosphere_dim, refellipsoid, lat_grid, 
                                       lon_grid, rte_pos ) + rte_pos[0];
  const Numeric r2 = pos2refell_r( atmosphere_dim, refellipsoid, lat_grid, 
                                       lon_grid, rte_pos2 ) + rte_pos2[0];
 
  // Remaining polar and cartesian coordinates of rte_pos
  Numeric lat1, lon1=0, x1, y1=0, z1;
  // Cartesian coordinates of rte_pos2
  Numeric x2, y2=0, z2;
  //
  if( atmosphere_dim == 1 )
    {
      // Latitude distance implicitly checked by chk_rte_pos 
      lat1 = 0;
      pol2cart( x1, z1, r1, lat1 );
      pol2cart( x2, z2, r2, rte_pos2[1] );
    }
  else if( atmosphere_dim == 2 )
    {
      lat1 = rte_pos[1];
      pol2cart( x1, z1, r1, lat1 );
      pol2cart( x2, z2, r2, rte_pos2[1] );
    }
  else 
    {
      lat1 = rte_pos[1];
      lon1 = rte_pos[2];
      sph2cart( x1, y1, z1, r1, lat1, lon1 );
      sph2cart( x2, y2, z2, r2, rte_pos2[1], rte_pos2[2] );
    }
 
  // Geometrical LOS to transmitter
  Numeric za, aa;
  //
  los2xyz( za, aa, r1, lat1, lon1, x1, y1, z1, x2, y2, z2 );
  //
  if( atmosphere_dim == 3 )
    { 
      rte_los.resize(2); 
      rte_los[0] = za; 
      rte_los[1] = aa; 
    }
  else 
    { 
      rte_los.resize(1); 
      rte_los[0] = za; 
      if( atmosphere_dim == 2  && aa < 0 ) // Should 2D-za be negative?
        { rte_los[0] = -za; }
    }
}
 
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void rte_posSet(
          Vector&    rte_pos,
    const Index&     atmosphere_dim,
    const Numeric&   z,
    const Numeric&   lat,
    const Numeric&   lon,
    const Verbosity&)
{
  // Check input
  chk_if_in_range( "atmosphere_dim", atmosphere_dim, 1, 3 );
 
  rte_pos.resize(atmosphere_dim);
  rte_pos[0] = z;
  if( atmosphere_dim >= 2 )
    { rte_pos[1] = lat; }
  if( atmosphere_dim == 3 )
    { rte_pos[2] = lon; }
}
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void rte_pos_losMoveToStartOfPpath(
          Vector&    rte_pos,
          Vector&    rte_los,
    const Index&     atmosphere_dim,
    const Ppath&     ppath,
    const Verbosity&)
{
  const Index np = ppath.np;
 
  // Check input
  chk_if_in_range( "atmosphere_dim", atmosphere_dim, 1, 3 );
  if( np == 0 )
    throw runtime_error( "The input *ppath* is empty." );
  if( ppath.pos.nrows() != np )
    throw runtime_error( "Internal inconsistency in *ppath* (size of data " 
                         "does not match np)." );
  
  rte_pos = ppath.pos(np-1,Range(0,atmosphere_dim));
  if( atmosphere_dim < 3 )
    { rte_los = ppath.los(np-1,Range(0,1)); }
  else
    { rte_los = ppath.los(np-1,Range(0,2)); }
}
 
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void TangentPointExtract(
          Vector&    tan_pos,
    const Ppath&     ppath,
    const Verbosity& )
{
  Index it;
  find_tanpoint( it, ppath );
 
  tan_pos.resize( ppath.pos.ncols() );
 
  if( it < 0 )
    {
      tan_pos = sqrt( -1 );  // = NaN
    }
  else
    {
      tan_pos[0] = ppath.pos(it,0);
      tan_pos[1] = ppath.pos(it,1);
      if( ppath.pos.ncols() == 3 )
        { tan_pos[2] = ppath.pos(it,2); }
    }
}
 
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void TangentPointPrint(
    const Ppath&     ppath,
    const Index&     level,
    const Verbosity& verbosity)
{
  Index it;
  find_tanpoint( it, ppath );
 
  ostringstream os;
 
  if( it < 0 )
    {
      os << "Lowest altitude found at the end of the propagation path.\n"
         << "This indicates that the tangent point is either above the\n"
         << "top-of-the-atmosphere or below the planet's surface.";
    }
  else
    {
      os << "Tangent point position:\n-----------------------\n"
         << "     z = " << ppath.pos(it,0)/1e3 << " km\n" 
         << "   lat = " << ppath.pos(it,1) << " deg";
        if( ppath.pos.ncols() == 3 )
          os << "\n   lon: " << ppath.pos(it,2) << " deg";
    }
 
  CREATE_OUTS;
  SWITCH_OUTPUT (level, os.str ());  
}
 
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void VectorZtanToZaRefr1D(
           Workspace&    ws,
           Vector&       za_vector,
     const Agenda&       refr_index_air_agenda,
     const Matrix&       sensor_pos,
     const Vector&       p_grid,
     const Tensor3&      t_field,
     const Tensor3&      z_field,
     const Tensor4&      vmr_field,
     const Vector&       refellipsoid,
     const Index&        atmosphere_dim,
     const Vector&       f_grid,
     const Vector&       ztan_vector,
     const Verbosity&)
{
  if( atmosphere_dim != 1 ) {
    throw runtime_error( "The function can only be used for 1D atmospheres." );
  }
 
  if( ztan_vector.nelem() != sensor_pos.nrows() ) {
    ostringstream os;
    os << "The number of altitudes in true tangent altitude vector must\n"
       << "match the number of positions in *sensor_pos*.";
    throw runtime_error( os.str() );
  }
 
  // Set za_vector's size equal to ztan_vector
  za_vector.resize( ztan_vector.nelem() );
 
  // Define refraction variables
  Numeric   refr_index_air, refr_index_air_group;
 
  // Calculate refractive index for the tangential altitudes
  for( Index i=0; i<ztan_vector.nelem(); i++ ) 
    {
      if( ztan_vector[i] > sensor_pos(i,0) )
        {
          ostringstream os;
          os << "Invalid observation geometry: sensor (at z=" << sensor_pos(i,0)
             << "m) is located below the requested tangent altitude (tanh="
             << ztan_vector[i] << "m)";
          throw runtime_error( os.str() );
        }
      else
        {
          get_refr_index_1d( ws, refr_index_air, refr_index_air_group, 
                             refr_index_air_agenda, p_grid, refellipsoid[0], 
                             z_field, t_field, vmr_field, f_grid,
                             ztan_vector[i] + refellipsoid[0] );
 
          // Calculate zenith angle
          za_vector[i] = 180 - RAD2DEG* asin( refr_index_air * 
                                          (refellipsoid[0] + ztan_vector[i]) / 
                                          (refellipsoid[0] + sensor_pos(i,0)) );
        }
    }
}
 
 
 
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void VectorZtanToZa1D(
          Vector&       za_vector,
    const Matrix&       sensor_pos,
    const Vector&       refellipsoid,
    const Index&        atmosphere_dim,
    const Vector&       ztan_vector,
    const Verbosity&)
{
  if( atmosphere_dim != 1 ) {
    throw runtime_error( "The function can only be used for 1D atmospheres." );
  }
 
  const Index   npos = sensor_pos.nrows();
 
  if( ztan_vector.nelem() != npos )
    {
      ostringstream os;
      os << "The number of altitudes in the geometric tangent altitude vector\n"
         << "must match the number of positions in *sensor_pos*.";
      throw runtime_error( os.str() );
    }
 
  za_vector.resize( npos );
 
  for( Index i=0; i<npos; i++ )
    { 
      if( ztan_vector[i] > sensor_pos(i,0) )
        {
          ostringstream os;
          os << "Invalid observation geometry: sensor (at z=" << sensor_pos(i,0)
             << "m) is located below the requested tangent altitude (tanh="
             << ztan_vector[i] << "m)";
          throw runtime_error( os.str() );
        }
      else
        {
          za_vector[i] = geompath_za_at_r( refellipsoid[0] + ztan_vector[i], 100,
                                       refellipsoid[0] + sensor_pos(i,0) );
        }
    }
}
 
 
/* Workspace method: Doxygen documentation will be auto-generated */
void ppathWriteXMLPartial (//WS Input:
                           const String& file_format,
                           const Ppath&  ppath,
                           // WS Generic Input:
                           const String& f,
                           const Index&  file_index,
                           const Verbosity& verbosity)
{
    String filename = f;
    Ppath ppath_partial = ppath;
    ArrayOfGridPos empty_gp;
    //Vector empty_v;
 
    ppath_partial.gp_p = empty_gp;
    ppath_partial.gp_lat = empty_gp;
    ppath_partial.gp_lon = empty_gp;
    //ppath_partial.nreal = empty_v;
    //ppath_partial.ngroup = empty_v;
 
    if (file_index >= 0)
    {
        // Create default filename if empty
        filename_xml_with_index( filename, file_index, "ppath" );
    }
 
    WriteXML( file_format, ppath_partial, filename, 0,
             "ppath", "", "", verbosity );
}